Index

_

__init__() (skbeam.core.constants.basic.BasicElement method) (skbeam.core.constants.xrf.XrayLibWrap method) (skbeam.core.constants.xrf.XrayLibWrap_Energy method) (skbeam.core.constants.xrf.XrfElement method) (skbeam.core.constants.xrs.HKL method) (skbeam.core.constants.xrs.PowderStandard method) (skbeam.core.constants.xrs.Reflection method)

A

add_param() (skbeam.core.fitting.xrf_model.ParamController method) align_and_scale() (in module skbeam.core.spectroscopy) alpha_f() (skbeam.core.recip.gisaxs_output property) alpha_i() (skbeam.core.recip.gisaxs_output property) angle_grid() (in module skbeam.core.utils) (in module skbeam.diffraction)

assemble_models() (skbeam.core.fitting.xrf_model.ModelSpectrum method) auto_corr_scat_factor() (in module skbeam.core.correlation) auto_find_center_rings() (in module skbeam.core.roi) ax() (skbeam.core.dpc.dpc_internal_state property) ay() (skbeam.core.dpc.dpc_internal_state property)

B

bad_to_nan_gen() (in module skbeam.core.mask) bar() (in module skbeam.core.roi) BasicElement (class in skbeam.core.constants.basic) (class in skbeam.diffraction) bin_1D() (in module skbeam.core.utils) (in module skbeam.diffraction) bin_edges() (in module skbeam.core.utils) (in module skbeam.diffraction)

bin_edges_to_centers() (in module skbeam.core.utils) (in module skbeam.diffraction) bin_grid() (in module skbeam.core.utils) bind_energy() (skbeam.fluorescence.XrfElement property) binned_outlier() (in module skbeam.core.mask) box() (in module skbeam.core.roi)

C

cal_diff_error() (in module skbeam.core.cdi) calculate_area() (in module skbeam.core.fitting.xrf_model) calibrated_pixels_to_q() (in module skbeam.core.recip) calibration_standards (in module skbeam.core.constants.xrs) cdi_recon() (in module skbeam.core.cdi) circular_average() (in module skbeam.core.roi) compton() (in module skbeam.core.fitting.lineshapes) ComptonModel (class in skbeam.core.fitting.models) (class in skbeam.fluorescence)

compute_escape_peak() (in module skbeam.core.fitting.xrf_model) construct_circ_avg_image() (in module skbeam.core.image) construct_linear_model() (in module skbeam.core.fitting.xrf_model) construct_rphi_avg_image() (in module skbeam.core.image) CrossCorrelator (class in skbeam.core.correlation) cs() (skbeam.fluorescence.XrfElement property) csb() (skbeam.fluorescence.XrfElement property)

D

d_to_q() (in module skbeam.core.utils) (in module skbeam.diffraction) define_range() (in module skbeam.core.fitting.xrf_model)

dpc_fit() (in module skbeam.core.dpc) dpc_internal_state (class in skbeam.core.dpc) dpc_runner() (in module skbeam.core.dpc)

E

elastic() (in module skbeam.core.fitting.lineshapes) ElasticModel (class in skbeam.core.fitting.models) (class in skbeam.fluorescence) element_peak_xrf() (in module skbeam.core.fitting.xrf_model) ElementModel (class in skbeam.core.fitting.xrf_model) emission_line() (skbeam.fluorescence.XrfElement property)

emission_line_search() (in module skbeam.core.constants.xrf) (in module skbeam.fluorescence) estimate_d_blind() (in module skbeam.core.calibration) (in module skbeam.diffraction) extract_label_indices() (in module skbeam.core.roi) extract_strategy() (in module skbeam.core.fitting.xrf_model)

F

filter_n_largest() (in module skbeam.core.feature) filter_peak_height() (in module skbeam.core.feature) find_largest_peak() (in module skbeam.core.spectroscopy) find_ring_center_acorr_1D() (in module skbeam.core.image)

find_support() (in module skbeam.core.cdi) fit_per_line_nnls() (in module skbeam.core.fitting.xrf_model) fit_pixel_multiprocess_nnls() (in module skbeam.core.fitting.xrf_model) fit_quad_to_peak() (in module skbeam.core.fitting.funcs) fluor_yield() (skbeam.fluorescence.XrfElement property)

G

gamma_dist() (in module skbeam.core.fitting.lineshapes) gaussian() (in module skbeam.core.fitting.lineshapes) (in module skbeam.diffraction) gaussian_tail() (in module skbeam.core.fitting.lineshapes) (in module skbeam.diffraction) gausssian_step() (in module skbeam.core.fitting.lineshapes) (in module skbeam.diffraction) generate_box_support() (in module skbeam.core.cdi) generate_disk_support() (in module skbeam.core.cdi) generate_random_phase_field() (in module skbeam.core.cdi) geometric_series() (in module skbeam.core.utils)

get_activated_lines() (in module skbeam.core.fitting.xrf_model) get_line_energy() (in module skbeam.core.fitting.xrf_model) get_relative_cs_ratio() (in module skbeam.core.fitting.xrf_model) gisaxs() (in module skbeam.core.recip) gisaxs_output (class in skbeam.core.recip) grid3d() (in module skbeam.core.utils) (in module skbeam.diffraction) gsas_reader() (in module skbeam.io.gsas_file_reader) gsas_writer() (in module skbeam.io.save_powder_output) gx() (skbeam.core.dpc.dpc_internal_state property) gy() (skbeam.core.dpc.dpc_internal_state property)

H

HKL (class in skbeam.core.constants.xrs)

hkl_to_q() (in module skbeam.core.recip) (in module skbeam.diffraction)

I

image_reduction() (in module skbeam.core.dpc) img_to_relative_xyi() (in module skbeam.core.utils)

index() (skbeam.core.dpc.dpc_internal_state property) integrate_ROI() (in module skbeam.core.spectroscopy) integrate_ROI_spectrum() (in module skbeam.core.spectroscopy)

J

jump_factor() (skbeam.fluorescence.XrfElement property)

K

kymograph() (in module skbeam.core.roi)

L

lazy_dpc() (in module skbeam.core.dpc) lazy_one_time() (in module skbeam.core.correlation) lazy_two_time() (in module skbeam.core.correlation) line_near() (skbeam.fluorescence.XrfElement method) linear_spectrum_fitting() (in module skbeam.core.fitting.xrf_model) lines() (in module skbeam.core.roi) load_amiramesh() (in module skbeam.io.avizo_io)

load_netCDF() (in module skbeam.io.net_cdf_io) lorentzian() (in module skbeam.core.fitting.lineshapes) (in module skbeam.diffraction) lorentzian2() (in module skbeam.core.fitting.lineshapes) (in module skbeam.diffraction) Lorentzian2Model (class in skbeam.core.fitting.models) (class in skbeam.diffraction) (class in skbeam.fluorescence)

M

margin() (in module skbeam.core.mask) MD_dict (class in skbeam.core.utils) md_value (class in skbeam.core.utils) mean_intensity() (in module skbeam.core.roi)

model_fit() (skbeam.core.fitting.xrf_model.ModelSpectrum method) ModelSpectrum (class in skbeam.core.fitting.xrf_model) multi_tau_auto_corr() (in module skbeam.core.correlation) multi_tau_lags() (in module skbeam.core.utils)

N

nbinom_dist() (in module skbeam.core.fitting.lineshapes) nnls_fit() (in module skbeam.core.fitting.xrf_model)

normalize_bin_edges() (in module skbeam.core.speckle) NotInstalledError

O

one_time_from_two_time() (in module skbeam.core.correlation)

P

pairwise() (in module skbeam.core.utils) ParamController (class in skbeam.core.fitting.xrf_model) peak_refinement() (in module skbeam.core.feature) PeakRejection pi_modulus() (in module skbeam.core.cdi)

poisson_dist() (in module skbeam.core.fitting.lineshapes) PowderStandard (class in skbeam.core.constants.xrs) process_to_q() (in module skbeam.core.recip) (in module skbeam.diffraction) pvoigt() (in module skbeam.core.fitting.lineshapes) (in module skbeam.diffraction)

Q

q_to_d() (in module skbeam.core.utils) (in module skbeam.diffraction) q_to_twotheta() (in module skbeam.core.utils) (in module skbeam.diffraction)

qr() (skbeam.core.recip.gisaxs_output property) qx() (skbeam.core.recip.gisaxs_output property) qy() (skbeam.core.recip.gisaxs_output property) qz() (skbeam.core.recip.gisaxs_output property)

R

radial_grid() (in module skbeam.core.utils) (in module skbeam.diffraction) radius_to_twotheta() (in module skbeam.core.utils) RCParamDict (class in skbeam.core.utils) read_binary() (in module skbeam.io.binary) recon() (in module skbeam.core.dpc) reconstruct_phase_from_partial_info() (in module skbeam.core.dpc) rectangles() (in module skbeam.core.roi) ref_fx() (skbeam.core.dpc.dpc_internal_state property) ref_fy() (skbeam.core.dpc.dpc_internal_state property)

refine_center() (in module skbeam.core.calibration) (in module skbeam.diffraction) refine_log_quadratic() (in module skbeam.core.feature) refine_quadratic() (in module skbeam.core.feature) Reflection (class in skbeam.core.constants.xrs) register_strategy() (in module skbeam.core.fitting.xrf_model) results (in module skbeam.core.correlation) ring_edges() (in module skbeam.core.roi) rings() (in module skbeam.core.roi) roi_max_counts() (in module skbeam.core.roi) roi_pixel_values() (in module skbeam.core.roi)

S

save_output() (in module skbeam.io.save_powder_output) segmented_rings() (in module skbeam.core.roi) set_default() (in module skbeam.core.fitting.models) set_parameter_bound() (in module skbeam.core.fitting.xrf_model) set_strategy() (skbeam.core.fitting.xrf_model.ParamController method) setup_compton_model() (skbeam.core.fitting.xrf_model.ModelSpectrum method) setup_elastic_model() (skbeam.core.fitting.xrf_model.ModelSpectrum method) setup_element_model() (skbeam.core.fitting.xrf_model.ModelSpectrum method) skbeam.core.calibration (module) skbeam.core.cdi (module) skbeam.core.constants (module) skbeam.core.constants.xrf (module) skbeam.core.constants.xrs (module) skbeam.core.correlation (module) skbeam.core.dpc (module) skbeam.core.feature (module) skbeam.core.fitting.background (module) skbeam.core.fitting.funcs (module) skbeam.core.fitting.lineshapes (module)

skbeam.core.fitting.models (module) skbeam.core.fitting.xrf_model (module) skbeam.core.image (module) skbeam.core.mask (module) skbeam.core.recip (module) skbeam.core.roi (module) skbeam.core.speckle (module) skbeam.core.spectroscopy (module) skbeam.core.utils (module) skbeam.diffraction (module) skbeam.fluorescence (module) skbeam.io.avizo_io (module) skbeam.io.binary (module) skbeam.io.gsas_file_reader (module) skbeam.io.net_cdf_io (module) skbeam.io.save_powder_output (module) snip_method() (in module skbeam.core.fitting.background) (in module skbeam.fluorescence) subtract_reference_images() (in module skbeam.core.utils) sum_area() (in module skbeam.core.fitting.xrf_model)

T

theta_f() (skbeam.core.recip.gisaxs_output property) threshold() (in module skbeam.core.mask) tilt_angle() (skbeam.core.recip.gisaxs_output property) trim() (in module skbeam.core.fitting.xrf_model)

two_time_corr() (in module skbeam.core.correlation) two_time_state_to_results() (in module skbeam.core.correlation) twotheta_to_q() (in module skbeam.core.utils) (in module skbeam.diffraction)

U

units() (skbeam.core.utils.md_value property)

update_element_prop() (skbeam.core.fitting.xrf_model.ParamController method) update_parameter_dict() (in module skbeam.core.fitting.xrf_model)

V

value() (skbeam.core.utils.md_value property) verbosedict (class in skbeam.core.utils)

voigt() (in module skbeam.core.fitting.lineshapes) (in module skbeam.diffraction)

W

wedge_integration() (in module skbeam.core.utils)

X

XrayLibWrap (class in skbeam.core.constants.xrf) XrayLibWrap_Energy (class in skbeam.core.constants.xrf)

XrfElement (class in skbeam.core.constants.xrf) (class in skbeam.fluorescence) xsvs() (in module skbeam.core.speckle)